PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041554.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 706aa    MW: 78326.2 Da    PI: 6.3148
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041554.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.33.7e-1323407041374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsPilkfshl 96 
                  l +lLl cAeav+++d  la+++L +l+  ++p gd+mqR+a++ft AL+arla + ++  +a +p++ s  + ns e l+++++ ++++P++kf+h+
  Pbr041554.1 340 LLHLLLVCAEAVAKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTDALSARLAATLTTNPRASAPQPFSpfPPNSLEILKIYQIVYQACPYIKFAHF 437
                  579***************************************************966555555544444411456*********************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e+++etg+ L+++A +l+vpfef++ v ++ledl+++++
  Pbr041554.1 438 TANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----CIEAVKETGRCLTELALSLHVPFEFHA-VGEQLEDLKPHMF 530
                  *****************************************************....***************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn v +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++
  Pbr041554.1 531 NRRIGEALAVNTVNRLHRVP------VNCLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 622
                  *******************9......344557****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vacegaer+erhe+l kWr+ +e+ GFk+v+ls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Pbr041554.1 623 EIRNIVACEGAERTERHERLDKWRKVMESKGFKSVALSANAVTQSKILLGLYSCDGYRMTEDNGCLLLGWQDRSIMAASAWR 704
                  *********************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.569314684IPR005202Transcription factor GRAS
PfamPF035141.3E-129340704IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MMINTHCGSM GSIKSENSCS SDLRPPSPTE STTMSMSISE SKKITIPPSS ELDQQSTLTP  60
PSLNFPTLKF ELEDVEVQSP DHSIWESMFS EQFDTDFMVL SPVPNNMPNS AQIGGSATHQ  120
NYNYNYAQSM QGQSLSGSSS PRFSPHLGAF SSTHNPKGKG LSPLRRVFNS PVNQYMEPAD  180
QNTHSLPVPV SIEDFLDDYQ RDGFIAAFPT TTSSKISGSS SQSYNHHDHL PASSTVPSAT  240
LDCVPMYNSS RFSRSASEAS LVTAGNSQLT QERSSGSGYQ QMSGAPLSQQ LQQERMQEKQ  300
QQPQKQHHHQ PQQQQNLHYN MMAPAIPMAH EQEQDSGLQL LHLLLVCAEA VAKEDYMLAR  360
RYLHHLNRVV TPLGDSMQRV ASCFTDALSA RLAATLTTNP RASAPQPFSP FPPNSLEILK  420
IYQIVYQACP YIKFAHFTAN QAIFEAFESE ERVHVIDLDI LQGYQWPAFM QALAARPGGA  480
PFLRITGVGP CIEAVKETGR CLTELALSLH VPFEFHAVGE QLEDLKPHMF NRRIGEALAV  540
NTVNRLHRVP VNCLGNLLAM IRDQAPNIVT LVEQEASHNG PYFLGRFLEA LHYYSAIFDS  600
LDATFPPDSA QRAKVEQYIF APEIRNIVAC EGAERTERHE RLDKWRKVME SKGFKSVALS  660
ANAVTQSKIL LGLYSCDGYR MTEDNGCLLL GWQDRSIMAA SAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-583407044375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346793.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLM5WZR20.0M5WZR2_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s33360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-90RGA-like 1